marc003

Crystal Structure Report for marc003


A specimen of C28H30O7, approximate dimensions 0.287 mm x 0.310 mm x 0.322 mm, was used for the X-ray crystallographic analysis. The X-ray intensity data were measured.

The total exposure time was 1.12 hours. The frames were integrated with the Bruker SAINT software package using a narrow-frame algorithm. The integration of the data using a monoclinic unit cell yielded a total of 24462 reflections to a maximum θ angle of 27.61° (0.77 Å resolution), of which 5682 were independent (average redundancy 4.305, completeness = 99.9%, Rint = 6.04%, Rsig = 8.18%) and 3068 (54.00%) were greater than 2σ(F2). The final cell constants of a = 17.280(3) Å, b = 6.9383(11) Å, c = 21.121(3) Å, β = 104.013(2)°, volume = 2456.9(7) Å3, are based upon the refinement of the XYZ-centroids of 2882 reflections above 20 σ(I) with 4.859° < 2θ < 48.12°. Data were corrected for absorption effects using the multi-scan method (SADABS). The ratio of minimum to maximum apparent transmission was 0.897. The calculated minimum and maximum transmission coefficients (based on crystal size) are 0.6685 and 0.7456.

The structure was solved and refined using the Bruker SHELXTL Software Package, using the space group P 1 21/c 1, with Z = 4 for the formula unit, C28H30O7. The final anisotropic full-matrix least-squares refinement on F2 with 335 variables converged at R1 = 4.56%, for the observed data and wR2 = 9.08% for all data. The goodness-of-fit was 0.823. The largest peak in the final difference electron density synthesis was 0.183 e-3 and the largest hole was -0.189 e-3 with an RMS deviation of 0.040 e-3. On the basis of the final model, the calculated density was 1.294 g/cm3 and F(000), 1016 e-.





Table 1. Sample and crystal data for marc003.
Identification codemarc003
Chemical formulaC28H30O7
Formula weight478.52
Temperature200(2) K
Wavelength0.71073 Å
Crystal size0.287 x 0.310 x 0.322 mm
Crystal systemmonoclinic
Space groupP 1 21/c 1
Unit cell dimensionsa = 17.280(3) Åα = 90°
b = 6.9383(11) Åβ = 104.013(2)°
c = 21.121(3) Åγ = 90°
Volume2456.9(7) Å3
Z4
Density (calculated)1.294 g/cm3
Absorption coefficient0.093 mm-1
F(000)1016


Table 2. Data collection and structure refinement for marc003.
Theta range for data collection1.99 to 27.61°
Index ranges-22<=h<=22, -9<=k<=9, -26<=l<=27
Reflections collected24462
Independent reflections5682 [R(int) = 0.0604]
Coverage of independent reflections99.9%
Absorption correctionmulti-scan
Max. and min. transmission0.7456 and 0.6685
Structure solution techniquedirect methods
Structure solution programSHELXS-97 (Sheldrick 2008)
Refinement methodFull-matrix least-squares on F2
Refinement programSHELXL-2014/7 (Sheldrick, 2014)
Function minimizedΣ w(Fo2 - Fc2)2
Data / restraints / parameters5682 / 4 / 335
Goodness-of-fit on F20.823
Δ/σmax0.001
Final R indices3068 data; I>2σ(I)R1 = 0.0456, wR2 = 0.0803
all dataR1 = 0.0928, wR2 = 0.0908
Weighting schemew=1/[σ2(Fo2)+(0.0348P)2]
where P=(Fo2+2Fc2)/3
Largest diff. peak and hole0.183 and -0.189 eÅ-3
R.M.S. deviation from mean0.040 eÅ-3


Table 3. Atomic coordinates and equivalent isotropic atomic displacement parameters (Å2) for marc003.
U(eq) is defined as one third of the trace of the orthogonalized Uij tensor.
x/ay/bz/cU(eq)
C10.30210(9)0.3423(2)0.57717(8)0.0264(4)
C20.36600(9)0.2173(2)0.55543(8)0.0271(4)
C30.39955(9)0.3613(2)0.51330(8)0.0294(4)
C40.32422(9)0.4491(2)0.47074(8)0.0285(4)
C50.26531(9)0.4705(2)0.51589(8)0.0279(4)
C60.19718(10)0.3497(2)0.63972(8)0.0325(4)
C70.14275(9)0.2705(2)0.67070(8)0.0344(4)
C80.13185(10)0.0735(3)0.66969(9)0.0361(5)
C90.17476(11)0.9608(3)0.63650(10)0.0439(5)
C100.22843(10)0.0418(2)0.60565(9)0.0379(5)
C110.24166(9)0.2400(2)0.60709(8)0.0264(4)
C120.0360(8)0.0922(8)0.7347(6)0.076(3)
C12'0.0701(16)0.077(3)0.7577(10)0.076(3)
C130.49065(9)0.2270(2)0.65000(8)0.0303(4)
C140.55103(9)0.1365(2)0.69522(8)0.0309(4)
C150.55296(9)0.9375(2)0.69928(8)0.0278(4)
C160.49174(10)0.8309(2)0.66113(8)0.0320(4)
C170.43110(9)0.9238(2)0.61671(8)0.0296(4)
C180.42943(9)0.1227(2)0.60910(8)0.0263(4)
C190.63308(10)0.6563(2)0.73306(9)0.0453(5)
C200.33595(10)0.6382(2)0.44007(8)0.0305(4)
C210.2702(6)0.8695(13)0.3621(6)0.0494(9)
C220.2203(4)0.8550(7)0.2940(2)0.0789(16)
C21'0.2706(11)0.861(2)0.3574(11)0.0494(9)
C22'0.1853(6)0.8864(14)0.3207(5)0.0789(16)
C230.12608(10)0.5931(3)0.47233(9)0.0427(5)
C240.04710(11)0.5710(3)0.43879(10)0.0564(6)
C250.02038(12)0.3957(4)0.41311(10)0.0575(6)
C260.07154(11)0.2410(3)0.42084(10)0.0526(6)
C270.15036(10)0.2632(3)0.45421(9)0.0425(5)
C280.17889(10)0.4406(2)0.48053(8)0.0322(4)
O10.34484(6)0.48152(14)0.62339(5)0.0298(3)
O20.32385(6)0.07383(15)0.51167(6)0.0305(3)
O30.44239(6)0.26796(17)0.47261(6)0.0380(3)
O40.39105(6)0.74816(16)0.45887(6)0.0368(3)
O50.27420(7)0.67619(17)0.39004(6)0.0463(4)
O60.08078(8)0.97873(18)0.69976(7)0.0533(4)
O70.61855(6)0.85770(15)0.74201(5)0.0351(3)


Table 4. Bond lengths (Å) for marc003.
C1-O11.4432(17)C1-C111.521(2)
C1-C21.558(2)C1-C51.572(2)
C2-O21.4318(17)C2-C181.522(2)
C2-C31.541(2)C3-O31.4192(18)
C3-C41.519(2)C3-H3A1.0
C4-C201.498(2)C4-C51.561(2)
C4-H41.0C5-C281.514(2)
C5-H51.0C6-C111.379(2)
C6-C71.383(2)C6-H60.95
C7-C81.379(2)C7-H70.95
C8-O61.373(2)C8-C91.380(2)
C9-C101.376(2)C9-H90.95
C10-C111.393(2)C10-H100.95
C12-O61.429(5)C12-H12A0.98
C12-H12B0.98C12-H12C0.98
C12'-O61.451(13)C12'-H12D0.98
C12'-H12E0.98C12'-H12F0.98
C13-C141.383(2)C13-C181.395(2)
C13-H130.95C14-C151.383(2)
C14-H140.95C15-C161.380(2)
C15-O71.3822(17)C16-C171.385(2)
C16-H160.95C17-C181.388(2)
C17-H170.95C19-O71.4404(19)
C19-H19A0.98C19-H19B0.98
C19-H19C0.98C20-O41.2095(18)
C20-O51.3337(18)C21-O51.461(7)
C21-C221.489(9)C21-H21A0.99
C21-H21B0.99C22-H22A0.98
C22-H22B0.98C22-H22C0.98
C21'-O51.447(13)C21'-C22'1.501(14)
C21'-H21C0.99C21'-H21D0.99
C22'-H22D0.98C22'-H22E0.98
C22'-H22F0.98C23-C281.380(2)
C23-C241.386(2)C23-H230.95
C24-C251.365(3)C24-H240.95
C25-C261.375(3)C25-H250.95
C26-C271.382(2)C26-H260.95
C27-C281.391(2)C27-H270.95
O1-H10.84O2-H20.84
O3-H30.84


Table 5. Bond angles (°) for marc003.
O1-C1-C11108.76(13)O1-C1-C2106.78(12)
C11-C1-C2118.03(13)O1-C1-C5102.51(12)
C11-C1-C5115.12(12)C2-C1-C5104.27(13)
O2-C2-C18110.03(12)O2-C2-C3106.36(13)
C18-C2-C3113.96(13)O2-C2-C1106.92(12)
C18-C2-C1117.04(14)C3-C2-C1101.67(12)
O3-C3-C4108.83(13)O3-C3-C2112.23(13)
C4-C3-C2102.33(12)O3-C3-H3A111.0
C4-C3-H3A111.0C2-C3-H3A111.0
C20-C4-C3114.89(13)C20-C4-C5110.95(13)
C3-C4-C5105.59(13)C20-C4-H4108.4
C3-C4-H4108.4C5-C4-H4108.4
C28-C5-C4113.38(13)C28-C5-C1118.86(13)
C4-C5-C1104.80(12)C28-C5-H5106.3
C4-C5-H5106.3C1-C5-H5106.3
C11-C6-C7122.82(16)C11-C6-H6118.6
C7-C6-H6118.6C8-C7-C6119.50(16)
C8-C7-H7120.2C6-C7-H7120.2
O6-C8-C7124.61(17)O6-C8-C9116.61(16)
C7-C8-C9118.78(17)C10-C9-C8121.02(17)
C10-C9-H9119.5C8-C9-H9119.5
C9-C10-C11121.26(17)C9-C10-H10119.4
C11-C10-H10119.4C6-C11-C10116.59(16)
C6-C11-C1118.15(15)C10-C11-C1125.24(15)
O6-C12-H12A109.5O6-C12-H12B109.5
H12A-C12-H12B109.5O6-C12-H12C109.5
H12A-C12-H12C109.5H12B-C12-H12C109.5
O6-C12'-H12D109.5O6-C12'-H12E109.5
H12D-C12'-H12E109.5O6-C12'-H12F109.5
H12D-C12'-H12F109.5H12E-C12'-H12F109.5
C14-C13-C18121.62(15)C14-C13-H13119.2
C18-C13-H13119.2C13-C14-C15119.91(15)
C13-C14-H14120.0C15-C14-H14120.0
C16-C15-O7123.92(15)C16-C15-C14119.71(15)
O7-C15-C14116.37(14)C15-C16-C17119.56(15)
C15-C16-H16120.2C17-C16-H16120.2
C16-C17-C18122.16(15)C16-C17-H17118.9
C18-C17-H17118.9C17-C18-C13116.91(14)
C17-C18-C2120.41(14)C13-C18-C2122.57(14)
O7-C19-H19A109.5O7-C19-H19B109.5
H19A-C19-H19B109.5O7-C19-H19C109.5
H19A-C19-H19C109.5H19B-C19-H19C109.5
O4-C20-O5123.41(16)O4-C20-C4126.05(15)
O5-C20-C4110.46(14)O5-C21-C22106.7(6)
O5-C21-H21A110.4C22-C21-H21A110.4
O5-C21-H21B110.4C22-C21-H21B110.4
H21A-C21-H21B108.6C21-C22-H22A109.5
C21-C22-H22B109.5H22A-C22-H22B109.5
C21-C22-H22C109.5H22A-C22-H22C109.5
H22B-C22-H22C109.5O5-C21'-C22'106.0(11)
O5-C21'-H21C110.5C22'-C21'-H21C110.5
O5-C21'-H21D110.5C22'-C21'-H21D110.5
H21C-C21'-H21D108.7C21'-C22'-H22D109.5
C21'-C22'-H22E109.5H22D-C22'-H22E109.5
C21'-C22'-H22F109.5H22D-C22'-H22F109.5
H22E-C22'-H22F109.5C28-C23-C24121.24(18)
C28-C23-H23119.4C24-C23-H23119.4
C25-C24-C23119.88(19)C25-C24-H24120.1
C23-C24-H24120.1C24-C25-C26120.15(19)
C24-C25-H25119.9C26-C25-H25119.9
C25-C26-C27120.0(2)C25-C26-H26120.0
C27-C26-H26120.0C26-C27-C28120.84(18)
C26-C27-H27119.6C28-C27-H27119.6
C23-C28-C27117.94(16)C23-C28-C5120.00(16)
C27-C28-C5122.04(15)C1-O1-H1109.5
C2-O2-H2109.5C3-O3-H3109.5
C20-O5-C21'119.1(7)C20-O5-C21116.9(4)
C8-O6-C12117.7(3)C8-O6-C12'113.1(8)
C15-O7-C19116.39(12)


Table 6. Torsion angles (°) for marc003.
O1-C1-C2-O2177.61(12)C11-C1-C2-O254.85(17)
C5-C1-C2-O2-74.32(15)O1-C1-C2-C1853.74(17)
C11-C1-C2-C18-69.02(18)C5-C1-C2-C18161.81(13)
O1-C1-C2-C3-71.08(14)C11-C1-C2-C3166.16(13)
C5-C1-C2-C336.99(14)O2-C2-C3-O3-51.22(16)
C18-C2-C3-O370.19(17)C1-C2-C3-O3-162.96(12)
O2-C2-C3-C465.27(15)C18-C2-C3-C4-173.31(13)
C1-C2-C3-C4-46.46(15)O3-C3-C4-C20-80.40(17)
C2-C3-C4-C20160.68(13)O3-C3-C4-C5157.02(13)
C2-C3-C4-C538.09(16)C20-C4-C5-C2889.03(16)
C3-C4-C5-C28-145.90(14)C20-C4-C5-C1-139.82(13)
C3-C4-C5-C1-14.74(16)O1-C1-C5-C28-134.87(14)
C11-C1-C5-C28-17.0(2)C2-C1-C5-C28113.94(15)
O1-C1-C5-C497.23(13)C11-C1-C5-C4-144.87(13)
C2-C1-C5-C4-13.97(15)C11-C6-C7-C80.3(3)
C6-C7-C8-O6178.65(15)C6-C7-C8-C9-1.2(3)
O6-C8-C9-C10-178.95(16)C7-C8-C9-C100.9(3)
C8-C9-C10-C110.3(3)C7-C6-C11-C101.0(2)
C7-C6-C11-C1-177.59(14)C9-C10-C11-C6-1.3(3)
C9-C10-C11-C1177.18(16)O1-C1-C11-C643.69(18)
C2-C1-C11-C6165.45(14)C5-C1-C11-C6-70.64(19)
O1-C1-C11-C10-134.75(16)C2-C1-C11-C10-13.0(2)
C5-C1-C11-C10110.92(18)C18-C13-C14-C152.0(3)
C13-C14-C15-C16-4.2(3)C13-C14-C15-O7175.00(15)
O7-C15-C16-C17-175.85(15)C14-C15-C16-C173.3(3)
C15-C16-C17-C18-0.1(3)C16-C17-C18-C13-2.1(3)
C16-C17-C18-C2174.27(15)C14-C13-C18-C171.1(3)
C14-C13-C18-C2-175.11(15)O2-C2-C18-C17-10.5(2)
C3-C2-C18-C17-129.84(16)C1-C2-C18-C17111.78(17)
O2-C2-C18-C13165.62(15)C3-C2-C18-C1346.3(2)
C1-C2-C18-C13-72.1(2)C3-C4-C20-O4-21.5(2)
C5-C4-C20-O498.16(19)C3-C4-C20-O5161.86(14)
C5-C4-C20-O5-78.49(17)C28-C23-C24-C25-0.1(3)
C23-C24-C25-C260.4(3)C24-C25-C26-C27-0.5(3)
C25-C26-C27-C280.3(3)C24-C23-C28-C27-0.2(3)
C24-C23-C28-C5178.42(17)C26-C27-C28-C230.1(3)
C26-C27-C28-C5-178.50(17)C4-C5-C28-C23-112.69(18)
C1-C5-C28-C23123.53(18)C4-C5-C28-C2765.9(2)
C1-C5-C28-C27-57.9(2)O4-C20-O5-C21'-2.2(13)
C4-C20-O5-C21'174.5(13)O4-C20-O5-C21-6.8(7)
C4-C20-O5-C21169.9(7)C22'-C21'-O5-C20-161.4(10)
C22-C21-O5-C20157.0(6)C7-C8-O6-C12-0.2(8)
C9-C8-O6-C12179.7(8)C7-C8-O6-C12'-29.8(12)
C9-C8-O6-C12'150.1(12)C16-C15-O7-C1916.8(2)
C14-C15-O7-C19-162.44(16)


Table 7. Anisotropic atomic displacement parameters (Å2) for marc003.
The anisotropic atomic displacement factor exponent takes the form: -2π2[ h2 a*2 U11 + ... + 2 h k a* b* U12 ]
U11U22U33U23U13U12
C10.0254(9)0.0234(8)0.0280(10)-0.0038(8)0.0019(7)-0.0024(7)
C20.0260(9)0.0250(9)0.0274(10)-0.0056(8)0.0006(8)-0.0027(7)
C30.0274(10)0.0308(10)0.0305(10)-0.0007(8)0.0077(8)0.0029(7)
C40.0278(10)0.0284(9)0.0274(10)0.0004(8)0.0030(8)0.0002(7)
C50.0262(10)0.0261(9)0.0301(10)-0.0013(8)0.0045(8)0.0006(7)
C60.0343(11)0.0247(9)0.0383(11)-0.0010(9)0.0085(9)0.0003(8)
C70.0319(10)0.0337(10)0.0397(12)-0.0048(9)0.0128(9)0.0008(8)
C80.0323(11)0.0372(11)0.0400(12)-0.0005(9)0.0108(9)-0.0070(8)
C90.0440(12)0.0278(10)0.0646(14)-0.0071(10)0.0221(11)-0.0088(9)
C100.0382(11)0.0289(10)0.0504(13)-0.0103(9)0.0181(10)-0.0047(8)
C110.0251(9)0.0263(9)0.0253(10)-0.0016(8)0.0009(8)-0.0006(7)
C120.084(6)0.062(2)0.107(5)-0.012(3)0.072(5)-0.020(3)
C12'0.084(6)0.062(2)0.107(5)-0.012(3)0.072(5)-0.020(3)
C130.0295(10)0.0228(9)0.0368(11)0.0001(8)0.0046(8)-0.0004(7)
C140.0269(10)0.0288(9)0.0334(11)-0.0049(9)0.0005(8)-0.0013(7)
C150.0272(10)0.0305(10)0.0244(10)0.0010(8)0.0037(8)0.0042(7)
C160.0392(11)0.0240(9)0.0303(10)0.0013(8)0.0035(9)0.0001(8)
C170.0288(10)0.0277(9)0.0301(10)-0.0014(8)0.0027(8)-0.0033(7)
C180.0256(9)0.0252(9)0.0276(10)-0.0017(8)0.0057(8)0.0006(7)
C190.0477(12)0.0360(11)0.0448(13)-0.0021(10)-0.0034(10)0.0180(9)
C200.0291(10)0.0335(10)0.0294(10)-0.0004(9)0.0077(8)0.0067(8)
C210.0517(14)0.0444(15)0.049(2)0.0211(15)0.0061(12)0.0032(10)
C220.085(4)0.087(3)0.051(3)0.033(3)-0.009(2)-0.006(3)
C21'0.0517(14)0.0444(15)0.049(2)0.0211(15)0.0061(12)0.0032(10)
C22'0.085(4)0.087(3)0.051(3)0.033(3)-0.009(2)-0.006(3)
C230.0344(12)0.0474(12)0.0440(12)0.0030(10)0.0049(9)0.0073(9)
C240.0370(13)0.0715(16)0.0563(15)0.0056(13)0.0029(11)0.0140(10)
C250.0295(12)0.0861(18)0.0516(14)0.0070(13)0.0000(10)-0.0019(12)
C260.0382(12)0.0618(14)0.0510(14)-0.0016(12)-0.0025(10)-0.0098(10)
C270.0316(11)0.0464(12)0.0465(13)-0.0016(10)0.0032(9)-0.0012(9)
C280.0285(10)0.0410(11)0.0266(10)0.0036(9)0.0057(8)0.0009(8)
O10.0349(7)0.0250(6)0.0272(7)-0.0030(5)0.0027(6)-0.0039(5)
O20.0295(7)0.0289(6)0.0315(7)-0.0091(6)0.0042(5)0.0006(5)
O30.0301(7)0.0468(8)0.0382(8)0.0005(6)0.0105(6)0.0076(6)
O40.0332(7)0.0323(7)0.0440(8)0.0017(6)0.0075(6)-0.0008(5)
O50.0386(8)0.0499(8)0.0433(8)0.0188(7)-0.0039(6)-0.0033(6)
O60.0588(9)0.0434(8)0.0695(10)-0.0050(8)0.0386(8)-0.0137(7)
O70.0371(7)0.0297(7)0.0332(7)0.0000(6)-0.0019(6)0.0065(5)


Table 8. Hydrogen atomic coordinates and isotropic atomic displacement parameters (Å2) for marc003.
x/ay/bz/cU(eq)
H3A0.43310.46170.54100.035
H40.30090.35560.43520.034
H50.26980.60700.53150.033
H60.20420.48560.64100.039
H70.11310.35120.69250.041
H90.1671-0.17490.63490.053
H100.2570-0.03890.58290.045
H12A0.07260.15970.77060.114
H12B0.00080.00810.75250.114
H12C0.00380.18660.70520.114
H12D0.12230.11540.78480.114
H12E0.0438-0.00960.78260.114
H12F0.03710.19200.74480.114
H130.49090.36350.64670.036
H140.59110.21100.72350.037
H160.4912-0.30540.66530.038
H170.3893-0.15090.59060.036
H19A0.5931-0.42120.74750.068
H19B0.6865-0.37800.75880.068
H19C0.6295-0.36890.68680.068
H21A0.32430.91620.36200.059
H21B0.24580.96040.38770.059
H22A0.24530.76510.26920.118
H22B0.21580.98230.27340.118
H22C0.16710.80790.29480.118
H21C0.30610.86120.32700.059
H21D0.28710.96550.38960.059
H22D0.17140.78840.28640.118
H22E0.17831.01490.30090.118
H22F0.15050.87260.35080.118
H230.14420.71550.49000.051
H240.01160.67750.43370.068
H25-0.03370.38070.38990.069
H260.05270.11890.40330.063
H270.18550.15590.45920.051
H10.35640.43260.66090.036
H20.35500.02220.49170.037
H30.49050.25750.49260.046


Table 9. Hydrogen bond distances (Å) and angles (°) for marc003.
Donor-HAcceptor-HDonor-AcceptorAngle
O1-H1...O70.842.062.8895(16)170.5
O2-H2...O40.842.172.8854(16)143.5
O3-H3...O40.842.062.8937(16)176.1