#!/bin/sh # Collect -D & -m options as java arguments command=java while [ `echo $1 | egrep '^-D|^-m' | wc -l` != 0 ]; do command="$command $1" shift done if [ -f ./Jmol.jar ] ; then jarpath=./Jmol.jar elif [ -f $JMOL_HOME/Jmol.jar ] ; then jarpath=$JMOL_HOME/Jmol.jar elif [ -f /usr/share/jmol/Jmol.jar ] ; then jarpath=/usr/share/jmol/Jmol.jar else echo Jmol.jar not found exit fi $command -Xmx512m -jar $jarpath $@ N"|3rhr.:J,q9l$m _2O2, ?Yn(glaܝƳ_DD6Klxz$O,t] g PӔJ{i#VfU0f{Q)ͱab2ŹPa5G) ܗrw)wp2X `Y܁#}ن¸ů "1񧎓 rReR 2cX`Gg1 Pp0~T\&+ģ.-\1&kN7 () z߹3l#oy86@AS(+ **i Bm#jo!A6GP -~8adrv*wC=DIa'(/3COE3cnV)~++V!v7C3RVOc/QX}$B8{qFd>|8V#1#kMZjaR.PK +:qBh,&org/jmol/jvxl/readers/Parameters.classY|՟t"# #!.lNF`GYVݭ'`'q8Jl bbI;:{{Yi%K|+{o̊OX[!G{+ه$SO6;v/6f '> )<|69/vxxӧ1C%|4gAV?_"^.;}Ye}XWuo|[w}G? O~s_T__akwWSO _U qpdHTI%QeAQ%4Eu HEoSt7!pA60/ـ$b1_) BW, Ţ. Do÷aKbiPbY@,q> 65~\Lڷ*4 .U: ^Eq1yo}?{Xi! 6 h!l {Llskh@\ _/ V"hms;|rN<(v.]~/lZ3ܽ=E;͜(gSl`d ;t,c(u=pΦ:͑HwGsDg!)p&qVN &gUi;fF»8&Nײ(r'-<#{浐ñxw$M;;]X&Ye4ѝ6:D NgW{3H-sKGAVϱb bFb5JKlh45wfZ%[;Bq[[xt4N&YIpkQٌH) jjkc;Q.9{DŽǑOQ#l+h67mot;VDgg3\y3mj vlj=h%^躰4ew,mXeÜոvJysGzvk{i@d(Ժ8`4l!QYZrH&&svRMT\F*=G34qelbج1IXE}}yʹ?g`"cۅ=[1oFKefipzVa%`4Igv>rmM#K{Xdi'&ݶ}4cjn2y[<巰lWr&vᛩv_ȷH6/ vl3(ؖѶD7嬻1÷?PO>$>.4'SfKIk4,DA]c&;m))\Φ+YLn#fe}NDf 6lkS ߺGX#m`ڨcق]5l۩(g+9f]n#fvrس'FӘ rg@DoG=N?5n8~wSX4]Ջ%V*s=2-B"UCr̝BCsUrȠ#uU[dr ՙ,^̙ʜѓ&iA.J^YyD󸋨_FZyTSHKYt N_c3L(ܷovt Ǖq42:䞝 6]ta; U٣X ;L&r?ougN+L4+[>1x5I]V1=i{:QZ?mmݸYrY,~y llO$bUD+=1:lP<;jڼPX3vmQ`MY#Umq;k:؟X-"۪$fF`NJ I~ İB~{ 3M)4h@O>9T9);e=o:JU@iM=]8'MYN+补NK㘑I3j촷Z=4此/ejfñ[ʻ-'MQ Љ#i*HM7}V9ǧ};jDZiLg{<N%'':LyFKE#Qs)VaT 9/QΨ*aeەؚ}072i}%Tdy WVageKwpkt0-#m] !LsRF00=lV0ѿD[ `,E(-~bx Ϭ(aֽ?wIA,Vd32\ןҠWйzUQ2qр\N;; OrV;j؛ { riaIК#[ca/hs<%2gL゗i|{YI7oh@@NAĨ هQ '>6w_6@ngLZ䵸R{>4_\p ̭X ŦCat*&[n }/^n7n-0h0wATT܊ @@;1Vx& R=HqqjhU_$5aBOb&,W("-2~Մ-5_\yx3oDMwxȀ|n2y*h| ƣѥw ϙzP7iM CX3sZ\C_a u_gV6n䨩͔{:oč +7ifq |.1gijZ], .[0ˡ_ŬӦNZ0VJVaO8'W%V"}EogP#-'Don:1ei<&nG/I3gw!A$^#oFI"6ʅIEz~}Ƅ)e%}A; gpXC6q&G4nMN)7j  j&Vm.^D*6lMn݌6Ặ06Sm:)Y3 5mZ11I^.b?i$y=4ރCF_ܣ{EJ :`sG E_'DC <$_P ÍleU5A7='lq~H<)??'DCx;{H<+'DCxl6=GiNn>'x@H\_• ~šOQZU)q<%x7C\yO9zN'z콊Ez1u<66{Ic_'z^N O>C"C蕞/w/ѫ&C׌3|Wx^ _F SxF7)~Dэ*_M*oQxG _*ܦꐾn$nWmSCᄚ)Ŀ\Tz] Rݪlq}* H^Ij>nJ=o)L߂(}RJ_yO*jRFsS‡^QoT&w·(|:߷)v ߩw);W7H\8> C]?^Vb PP%C%CU%5Jl^Kl+Z]+Vbf,g5%6G-y`Cr '>&hJ%:/:(NP?2]vr(PCC. Ъ[>J5 ^5.^m]"XAYHM%@:h)-N@~%χ ?Ŷ"X7 ٥aVڤ$%֮S!v%:᠀vvUQ 00.[6̮؆FWQ9^ ZRS)9"Ϡ_ F۫rB!6ɪd~m0bQ)hsGpG'ukUU#l/%x_ . ͌,)fw-`GXnL%OVu+hKf4ZfY#|u{8+BǩayD!EP/җ!%l;f-rƳqUSJ{f1~\ld~iB&RbESl (]&g~\{:xrp^{-_pr'ulk*fbמbQ-r]?ŽF؍7 >t[c H@-zM Q32Z@텏gw,ɡQL*ЭtXe4/.gX[a-Caa7 DMݮ6uጜBCltQΏ"# G3 k[ԞhG7=DF]wx]M@S1}š>@Mp_,!6wqh<6 尘zkaj;%‹HPVo;Ye-bKBGCl^emm䰖=1*jH0;~o~WoP&m(&)Ex{lHQ3 ;Q[_ۧxZe*U !\߇iYKt^B.)rn:U]jVTbmɇԴ%1TYe+\/+՗UW\\ 3Q0]_ @xxF Ӡ${P# !M}XUjVxHuZR{$=> }aaqmBvM _W0k; >[J۰!P>CI7܏ա9)\ }=|L<]ҏ8t;&IN\CCSR]#ϳ6.U:=O8#uMNA)#'_/9 -9vS|ԗz=M+[.e/T<4"qE }@z Wb(c+HѸt?V"fG(s4/ 畖x &0J(!P)PK +:.<1} .org/jmol/jvxl/readers/PltFormattedReader.class}Vi{U~I;d(!@20 `qAZ6PmLҩLL*⊠ * ҴwE=g&IMgwn D+nUb>3ye{}c}xeE`ɠGxbp7GQ<O!T10G3sP L8bj,ErͲLT@Pz8ZR5+U+1[&NS҇fó,M~}oTڄfEqzweB:w>ԽHr036'-Hk"FDL,C}%<8LuRD^K;SVjs>N(HBek:kXpPy xW #)CiaW{ű֧ɶ։p_Ab *ii%9TfiW鬯8~ַ-N!r9CxrXy}53:r&HF_Tj p).KѮqž)3YOcuk:…0KА_a!&J>` 1Y&0772"~D(DA.a|; ЅFCA 9尡'Lr@&w 6:rW؝pw6Ԕ"b#Nk9/'psAOܔ`k-,k8ir6b*> FUKibf3* okfnb9[2yoz]~Hpp)l|C/?PK +:n;,org/jmol/jvxl/readers/SurfaceGenerator.class: xT3swݽyX\bȃ `I$Qa{\ܗjhmVF+*E}imCKjjܻIv̙3gΜLx!tVa;]Aovldzeo˝";=4wl=/+Ӄ2A2ItAiA`|c6c6?Qlql~͏y'y ֏3 L 'ҟϱBs BzB Ao;"}I/RG,?c"W } LDo9 }G:weOK!B?S~f#GB EP8 cK Ҫ0ӡ0'®!0I sa?Ya07SiOW ̈́}1fA٠6GasqxNPX V}ʱP+qB:Qa@=l1K9IaU ;wUSU/Sة/WiدPX-+V*y [ZlYeֈM`lšEfg8Hm@dvmRfFANu!Ldt6gc«n L g=8 O>HMa M@aA;+" ;WaQᔸe6xTSCa;?Oa# 2Pap8U'BKv̾ oduyo8{_ `M]PطٕxHVUb"]ls<q=ۋ>lvNQa7)fu[v+nS2r 2s2R-{p½ ;d}2vP~&dt99"C:?5݋J;b@a#,`?`c<10w~c8I-e4Tf?D/עLk G{+Á]Jm`G`7dz~V34Bd -z1Jf!j^X7VقZ>15zf6) 7hբűx#zJAp0,ԎYAoקz[F51_eh*v)C i"T0?8L pQoW[!NJ:Jk|Ao]=K9JJ 1Zz(m_KSb/hwT9ָ֘7 ȷjЫśܒb&8vz[u|oFl焍K9 w͜0sܞ3C93jk'+ͣxEYj#p?z$N$v^lG9zصd~W6< YkHj)NVV-n(se7jbR{F]Bkt\cqK,i &k; c1&̷_cz\КC=~?.XpX(m[wWcp Ls6PRSr\5  6`\pǐtkQGI, Gh|g]4?Sr0qr6ǔ&a@ֽX cG1"Y 'Vt#Pv¾s;(; h!Ae`8p5.,Y@eﲷewއgÂ4e} 썫z9D^1nFU,02\-)/S~O(- |FFY5~^Š8tLe" L A!yrxCz, ";U/ ƢO'Sy;0IX—\,f$;>TfE5*sYhnAl9ݰf>Gp$/ukDp@J,ՠފi܉U!.?f$V_pmH$Ix#`C 6%K6U%l^VT(S`TAX/H ^֭>o *B=4{8UG T*&t'vJEDL h0kNAHMRN&q+g$@A8(-b\U:CCp?׍ۙbN'IFUJXJwkў#}ZLf@=2CJk.8 ]k@Z Gba>F.C ls7 nvqo@Jǫ<lJ\cJLC$$U*ʐs*Ui*UJ a-;vD @mG^: uh< qk7) Z7ԭ0ئ*-I9<蚘j@^% ⧸6_M/;󑣂Dtc]?q'ާy0M)h5RUZ&*KU4i*բ?)(|0}p;4 nVN¦ffvN;I]{\Ƶݣ<@n MSUdimW\JRSz*/ŦuDW#4\ 6f)Gfh !?mz'J (z$*e8F<Ρtib(zRdv/Fe 6YיAC<۽1 >UxaO,giÀbނj#ݱprRIi[61lR[7G+QVm QX" 2u݅sst,JgӋUi VlH.ݒO7ћ!Ua9|Q&K=+ U;q帹*``[T^(4`@ .d i!ny+:Rˎqcżc͍mzo;[|m0` ۽>jLW o<^`P4.h+ORobNT$;Q' kOt.F\p)'ǧfhF<3v-!}Kk;C>iF*?y6_bctd6fA]%ٟ&g}(j,dQrQ y S^ _/N <̪E<% )`0)] s ;ʖƔࡆ ge}O=s=Bel8wȟ;}bmW9A_߯5!=lHB{v.ab)*{$6F(OyAq*IiDIs&mQ4;}MZ!6~\pߗdyl8X7jQGe}bG-qgf+\ɬ>Ue;f3M:{Z҃&ZɋU2b%vlP6J}63QZOdhqjϽkH-^Y(\w@[_4gVC*t+~~=EWZBHa _ ߠy_O~-m:z:if޷3'86& yFegҳ/% :b#p-%KG-=LXĒ?m)w8E'⼏pA|mЯ?-+p[gA089w%ZZ y0=8$HaiS$0`T$R&5DnKL.u[9!Қ n3 24IQt¸&a2z#-tZI@w}YUsX۲ O.Cv;1 h$40Y$qbJ@3$KU Z0^ma~=N4qW k[h`dNG&vCl ,#*t=Teq[B4tY%I~]:ty~pj0ڐ$ RRm>j34О SI#&f ـY3=-1(~-R Z& +ƒ1h/Q\P> t!Vp7֖{3$lO>@h` 6!|CT\€dP p4.8})`QL 8a2i ޙ 2V; Ɲ{!j|"cΗ S_U/dR+I.$K,Lb_dd]ۍP"g%e08.7v`qHr\ ogrxd"E5n!rM Gfڌp|LYfq)I\ ~d`z{@@1ʲ.qVfd^?N{8썀)C 7|KNL[u8Cw=@VhuY.;_w \xs93$ ̃/A+@t?fl(IKt e^1B ^! >a| <8(X#Ia9ጥk>,(mV4ݣ@jqPt?)6O:IcAs`ʴäm9BIJI30CKd` ٳFN$yпDE4)fXo w&mݽ,='d_F\EhE^'!]Y+'Ftbf>^L @PrGaIu͟3B@iy \qy *RU 8 c냤=m|2MC'[ oJ$5bm&]!RNMCG;)wCE#b{Vjߛoلi/Xr`ow&2E= ?@,C )5tk:o.FȿPfLl0UT+⺱$GP+?`[$pa~V|&7ٿ?0]E S ">Rs s A1|,I%CRA-D-vkI<{lְ-CØ7fU\Xǟl0jBAAC"tp׆;X6s Pb^K3v'2vMۅ @T,㴌i!xL2 Ӫdy:]QzEwEYjec'bqg\Jb5]M B,[B'Qsl*H:@cs%D3yhJa01h0IF2R ğ (Exi;OnCBv=;- &J~s5$ZOD!+Q="Kڡ'"C2n>; ?D"d_R@=<sIDwT[{ !]Hferp*|VYgj4#HmclxGL]߂/PK +:̛x5org/jmol/shapesurface/Pmesh$PmeshBinaryDocument.class}TrG=37FY# 8AɈb%(lm- 5Qʹz \)*TnKbw];wg/,6-l Y\NW4pBhCWSkO |jg&> m1Oiu0y SM% X’E²[a C%._12o^#՘j l5E[FpKdq%Cj뫦Tn@\U7EURgkK^B)Zs3w A]2XߢO CHdw![q r\ TN `Q(ϵaR-xuð7]_]{zn"3=mr kO"tI&W?8#:s9wqa5paM '~~rf !A:AӒpSjye(ÙWn;{M7-zТȨWrcрg8]VheIR4:[0]#wT.'ԊU*rx<߉q7*% jWDү3S 7V4wY(  i`S^m (y#E\LOь`]4wޞ8Ѭ{9.${{zF?e̴ܬ8x# k= #$N޼F1}q8CzD'ͪS Z1~) }$)%aOg2a$%) pѝT/m10c}CT0yZ;ȏ'$YOnJP88=3v x^ 2]PE_2WKIïu|7%|˅-<˫}>,#?fOe9S~!2~~6~we^X,'FY?JiO[X2fdYY& $KFpUbԈ5P4%Z"j2%SOvF.-ѮG5I`C:bZ$\qmM$b w~uT FPHѡz]=;5v6uhjٷswGsk@yK,4ԨG踒~BYa`sjpPKhݚ:%6 lj%Gb`rXkTbP kAӾXI; zT7zl(ebc%5+k ,7זJg~-ld))C H3lyBsHioIW‘XŖ8 8A#n|:N>=t6KQ0GvŢY wɌ'˕Pu_H[p$ f"AWȕCo ތEUzRg@,ed1'CȆ@WwP}3oΑ|)ců‘?!-+HrRoPcF*bXDi_]YE%0Gm*bp+b(RExXe@LSPh"p=:F!=i(ElSDhٮ\"}#Ud3K >j6'r|0=M7{sqws8")z<~Ab5vګ'ј55oRѼj\ J" D,*FBK,bb(;Gwk#6r& =N_N{E怒W@,!whVR:b|pyDBM+lh|m7 ;Sj$9+Y6.jF*>Cept; Aiaս>$%mM=u%ne /-l4*|F̢P|sX?El%^ԝ,䆬 >Wf)rM@eq|ggmɼ:9&EͷV+sGa lf͔biY mj!mH_[[FL=A$¡b hUM93}q@M^#|hTG=!o4 icV1^N.#vm='D %$'4r;QSp iS).NAB,i,vi2.$*I-3eˉ)+2X`%`1w1vBvWk0VEmiא~i'uD[?sq+M[ Χ\d.#)TQ=&t 6Q3`=. e[ܛ:Bupjj$q1qDx&g^~G.}` >0:EG[4 \| g.xh'2Pmzc\dˆ66ܗfP7A'UG &,n`A>p>ˏh:jBpOzR 9yۑh6wkmWg# \ABWBv뫣h-]֖ŝ:3:t[qWk?'liʱn§!d`8Hw](FsA97ZsV-_AzL ʮhrZ_ ^=_1cfU,542XuhkMS^[H{3;bg'],N&wnʌj*5EҤ4ms{YJCO"XE[>W;Z@i;liE*,e]@Gm t9WZ mKYw9 Dz4Bp mS pgzLFޙ7뻋<Ǯ }(ct}2r\gḏ=[ƧVGY0hy-=IPK +: )org/jmol/shapesurface/PmeshRenderer.class;o>f].. fYb✟Ƞ__XZ\ZZZZ JIA h0!T  Z70PK +: AMETA-INF/PK +:Ltjx+META-INF/MANIFEST.MFPK +:Aorg/PK +: Aorg/jmol/PK +:Aorg/jmol/jvxl/PK +:A<org/jmol/jvxl/api/PK +:Alorg/jmol/jvxl/calc/PK +:Aorg/jmol/jvxl/data/PK +:Aorg/jmol/jvxl/readers/PK +:Aorg/jmol/shapesurface/PK +:T^U&6org/jmol/jvxl/api/MeshDataServer.classPK +:(7((org/jmol/jvxl/api/VertexDataServer.classPK +:"Q!wb&org/jmol/jvxl/calc/MarchingCubes.classPK +:KC6&org/jmol/jvxl/calc/MarchingSquares$ContourVertex.classPK +: (t5 )org/jmol/jvxl/calc/MarchingSquares$PlanarSquare.classPK +:En/(v,org/jmol/jvxl/calc/MarchingSquares.classPK +:"w!Dorg/jmol/jvxl/data/JvxlData.classPK +:u0 !Gorg/jmol/jvxl/data/MeshData.classPK +:ֳ#Norg/jmol/jvxl/data/VolumeData.classPK +:S&Worg/jmol/jvxl/readers/ApbsReader.classPK +:ͣ c*K\org/jmol/jvxl/readers/AtomDataReader.classPK +:ޚbh&Hiorg/jmol/jvxl/readers/CubeReader.classPK +:E/(lorg/jmol/jvxl/readers/IsoFxyReader.classPK +:YTH'Hqorg/jmol/jvxl/readers/IsoMOReader.classPK +:בyJ(xorg/jmol/jvxl/readers/IsoMepReader.classPK +:0*q|org/jmol/jvxl/readers/IsoPlaneReader.classPK +: ` *torg/jmol/jvxl/readers/IsoShapeReader.classPK +:0G",org/jmol/jvxl/readers/IsoSolventReader.classPK +:d (org/jmol/jvxl/readers/JaguarReader.classPK +:J !C&org/jmol/jvxl/readers/JvxlReader.classPK +:g-morg/jmol/jvxl/readers/LimitedLineReader.classPK +:qBh,&org/jmol/jvxl/readers/Parameters.classPK +:.<1} .8org/jmol/jvxl/readers/PltFormattedReader.classPK +:n;,org/jmol/jvxl/readers/SurfaceGenerator.classPK +:?f/,_org/jmol/jvxl/readers/VolumeDataReader.classPK +:qV,[org/jmol/jvxl/readers/VolumeFileReader.classPK +:Ɋst1'org/jmol/jvxl/readers/VoxelReader.classPK +:9d&'Y.org/jmol/jvxl/readers/XplorReader.classPK +:B<<*6&6org/jmol/shapesurface/Isosurface.classPK +:>eE|*pQorg/jmol/shapesurface/IsosurfaceMesh.classPK +:N˻A.Yorg/jmol/shapesurface/IsosurfaceRenderer.classPK +:jV 6'borg/jmol/shapesurface/LcaoCartoon.classPK +:Uj/lorg/jmol/shapesurface/LcaoCartoonRenderer.classPK +:iϲt.morg/jmol/shapesurface/MeshFileCollection.classPK +:_e V,oorg/jmol/shapesurface/MolecularOrbital.classPK +:W84A}org/jmol/shapesurface/MolecularOrbitalRenderer.classPK +:̛x5org/jmol/shapesurface/Pmesh$PmeshBinaryDocument.classPK +:ӑvb !Oorg/jmol/shapesurface/Pmesh.classPK +: )org/jmol/shapesurface/PmeshRenderer.classPK11QKMZ[KG=7u R%fS 4TOX j^ #BRМes˕#1O촉:boҐJ"K&n(*%Pdw1p!>{ д|&+xI6r&Y gD؍adyUΔ:o:Y6cw<؞Q2)3N՛)1 Ͽ *H\ w.N5eaQbKze]_/h=hc.~D.NI-gl*I=:8KOGW;5,16Bm<3MMHVeCۃ]'o"ԉvcsj@Y 9jW>b];/.Z LwΥwKwON4Dx]v9{Vni 5mo" {Pa Z RI 9uA/n."^T*C;-9*t*HP|_}heu{F`X<]^E5O%~w'#f$ijj>ڨ bHfB I"y觶;Cp@ pіr3$0I$0t`{sn pn|2 (_!^NU$VWT3F `9ǃɞ":R@tX®ѝ~F6]-HJh-i|_K%#!o3~v`%^`E)6i8[x 99ÜSu4,pzz[)hΊ&Q@o,٢Ne~W쒻KoKk\ \pɚ"d߼$֭V(_].30!Ȅ刐->< wn@ro5?%nMXoj?o>ୗ-dҦķؐXҰ3ʱro;[DuN _@ޯ^GJEJ>E6DܦndC9޺>$jahBz-ރ z/Cn:Rm۽0wri\ա%0l{U濊-.trJie%ۍAzg1fzTn;seq",z.(:Z--C>S >dfMc/l!A|/{OB|P[ h[aruIWMRnC >L C6 ^OnU`ug}]oeQ,lrgss}|uriOff2!LKp={TGH@ I-:7 " D7jI grv>.7c35e$qvf -U^PAR_R%#ZF+M$Eeu$h!*,`!^/"*gX d7{ϐS$nESl85Rfbw4c܈#W]xBى+1;w'-Ё){-ϡ,~1ps㧁h1JABBCmL'S61YP槭yhF";;2S;֕3ķsg<X$Ў;:ͷSV*.t)9UJџ9ґ@cъa9^?1#q`F$P,?չۨ <,h52(1ŬJ9|2up. /ӖUSmR紦E;u>)Oi YҀohLc|  .I&e̲v}eeLa7zk%Rݜ1fΫُwLNf\'Ȱ94m[wMy^ʷan`&n@ ~pq?Y" MsSuZ<*uQ-G*Z3Ք[:ڽ\t|z(bZ1Dէykԉh#S> Rr 朑+iUV~ύ$3o_Cn&ZP-ekf/!E !4:,X>iִ(SAEj!V%Vz`o$0쭿XN o壻%zH.%1HY{SWT?I|ݟ @B0v?4?LJ/O{9 T=xۇXϺwlSM61 S% p6cwH;ES[w,pEV`6&&楓C Ԏt[ȁH-Ї&V"Akօa߰ gnWy1NO-1d|Z1|˃ 0DO䜮ߘgxZ%G?7%q3>YC4w)hRqF,LRj%R]G"{{t~8׼Xlj| ,73"Xjy{g1=9Vo*Oap7 N'LtȜp@3D?lG6T{_QPȉ؄1+e7h_#RO#)ړI Jc'2Υ} hh 1ger-oEo}bMx Bvgk#B{?; w+k."#st;QcWg=*@ ze::sEql0*USc"(j(Ym! 9P;Gt .~Ұ$͑(#'K{FL,J{Gd2ULʠ>6heynjA M̢Kʏ~rD/0&wF#q,;bl4J0"EKwBhofE 6O'(O~ 6Pp( >`2皹۶!7Wd&03q7PʓJNY3荫&M 7<$?^CWVq{5jmz`GeZ)ំ[AsF!G%ݜu'$mgt\(cklm(,ظpg^AU*Zp!]0p'BC[3Yiw+mZo: Pׅ)U \dqHFAQEq.s@=hށw )oÃ^%Gŋ/C 6ҡkLA}$X&Pe:zVĎUSG"EֱSx= r ħgc$5v|3$J@ERUNMxJ0q=T3/ T$[6Uua2/KɅP+SA9G[ ,{#%"liN{Tndۧ:s:c(,PN4Y .L\TOsl e=gX₽ՍBX ifN(;W*0Lڈ(b8YБAS7A` &aƙ{O5hYݥtK[w#4jU*TgW)S.*p7KTrAg$I]+ |H So<A! 7S*₫yJЁae\ƈ&ۡdA4;@Ǧcx07]%! -A|(7C֣ q3K,aۥ"rDQyR\,7QOཕ5s~[ j*w]ʄ^3sQk=m!ʭ&^*kј>to&MT#MYIBNG9ZϜ͂4ZmTG,mLq藰 MTbd#>um BVec JF12=.`qarqLas| #OSIeNa.nme`ers distanceAngst?*92 -'5[,/-,,0;C(259rdiwkanoMm^GXq!pijins = pickOff pi}jCe#113 9'%D!)('i7'M8 1)dn4p}ccA|o#[SW-gcua p|ckElement PDBkck-5(Cim#,/-;(;^rDVXYzickSif JickSpin JVM1;slowMenu | Shr =m6<.Z'5[y ##nuLife shoEBVeHeader - shkwOrient showMdsuGp8im}Szacegrv[showState SYDMETRYshowSymmqryO')f>.* c##nu*-*showIlXOrface showMo1- extractMOL LGN*6 @ " ADP8 Kpv!neanPdb lbO|ileOrURL loa}FileUnitCell "&lo4L%2-&>1!]),kRc|e*= wrifmSleTextVARIABlE writeState 1tit :\LDeAJ= XF$.Qmbruy(-( qBNյ_grrfne XriteVrml writKayx<\0_ >()(AED65O> pObEQESLACp8224s 0(s=0XX_9]Cxh_Y FenZ | Set Y Rate0 s_RJ^\VQPVBQQDGC%6 & _1%8, L2p%Tate 6 x0q5 %0 s20 s30 s40 s50 [set_spin_FPS]Menu | Set FPS = s0 s5 s10 s20 s30 s40 s50 animModeMenu | Animation Mode = onceThrough palindrome loop surfaceMenu | Surfaces = surfDots surfVDW surfSolventAccessible14 surfSolvent14 surfMolecular CHARGEsurfMEP surfMoComputedMenu - surfOpaque surfTranslucent surfOff SYMMETRYUNITCELLMenu | Symmetry = UNITCELLone UNITCELLnine UNITCELLnineRestricted UNITCELLninePoly [set_axes]Menu | Axes = off#axes dotted - byPixelMenu byAngstromMenu [set_boundbox]Menu | Boundbox = off#axes dotted - byPixelMenu byAngstromMenu [set_UNITCELL]Menu | Unit cell = off#axes dotted - byPixelMenu byAngstromMenu byPixelMenu | Pixel Width = 1p 3p 5p 10p byAngstromMenu | Angstrom Width = 10a 20a 25a 50a 100a aboutComputedMenu | About Jmol = APPLETjmolUrl APPLETmouseManualUrl APPLETtranslationUrl # Part II -- Key Definitions # -------------------------- colorrasmolCheckbox | RasMol Colors = hideNotSelectedCheckbox | Display Selected Only = set hideNotSelected true | set hideNotSelected false; hide(none) perspectiveDepthCheckbox | Perspective Depth = showAxesCheckbox | Axes = set showAxes true | set showAxes false;set axesMolecular showBoundBoxCheckbox | Boundbox = showHydrogensCheckbox | Show Hydrogens = showMeasurementsCheckbox | Show Measurements = showSelectionsCheckbox | Selection Halos = showUNITCELLCheckbox | Unit cell = selectAll | All = SELECT all selectNone | None = SELECT none invertSelection | Invert Selection = SELECT not selected allProtein | All = SELECT protein proteinBackbone | Backbone = SELECT protein and backbone proteinSideChains | Side Chains = SELECT protein and not backbone polar | Polar Residues = SELECT protein and polar nonpolar | Nonpolar Residues = SELECT protein and not polar positiveCharge | Basic Residues (+) = SELECT protein and basic negativeCharge | Acidic Residues (-) = SELECT protein and acidic noCharge | Uncharged Residues = SELECT protein and not (acidic,basic) allCarbo | All = SELECT carbohydrate allNucleic | All = SELECT nucleic DNA | DNA = SELECT dna RNA | RNA = SELECT rna nucleicBackbone | Backbone = SELECT nucleic and backbone nucleicBases | Bases = SELECT nucleic and not backbone atPairs | AT pairs = SELECT a,t gcPairs | GC pairs = SELECT g,c auPairs | AU pairs = SELECT a,u A = SELECT a C = SELECT c G = SELECT g T = SELECT t U = SELECT u allHetero | All PDB "HETATM" = SELECT hetero Solvent | All Solvent = SELECT solvent Water | All Water = SELECT water nonWaterSolvent | Nonaqueous Solvent (solvent and not water) = SELECT solvent and not water exceptWater | Nonaqueous HETATM (hetero and not water) = SELECT hetero and not water Ligand | Ligand (hetero and not solvent) = SELECT ligand PDBnoneOfTheAbove | None of the above = SELECT not(hetero,protein,nucleic,carbohydrate) front | Front = if not(showBoundBox);if not(showUnitcell);boundbox on;moveto 2.0 front;delay 1;boundbox off;else;moveto 2.0 front;delay 1;endif;endif; left | Left = if not(showBoundBox);if not(showUnitcell);boundbox on;moveto 1.0 front;moveto 2.0 left;delay 1;boundbox off;else;moveto 1.0 front;moveto 2.0 left;delay 1;endif;endif; right | Right = if not(showBoundBox);if not(showUnitcell);boundbox on;moveto 1.0 front;moveto 2.0 right;delay 1;boundbox off;else;moveto 1.0 front;moveto 2.0 right;delay 1;endif;endif; top | Top = if not(showBoundBox);if not(showUnitcell);boundbox on;moveto 1.0 front;moveto 2.0 top;delay 1;boundbox off;else;moveto 1.0 front;moveto 2.0 top;delay 1;endif;endif; bottom | Bottom = if not(showBoundBox);if not(showUnitcell);boundbox on;moveto 1.0 front;moveto 2.0 bottom;delay 1;boundbox off;else;moveto 1.0 front;moveto 2.0 bottom;delay 1;endif;endif; back | Back = if not(showBoundBox);if not(showUnitcell);boundbox on;moveto 1.0 front;moveto 2.0 back;delay 1;boundbox off;else;moveto 1.0 front;moveto 2.0 back;delay 1;endif;endif; renderCpkSpacefill | CPK Spacefill = restrict not selected;select not selected;spacefill 100%;color cpk renderBallAndStick | Ball and Stick = restrict not selected;select not selected;spacefill 20%;wireframe 0.15;color cpk renderAnisBallAndStick | Anisotropic Ball and Stick = restrict not selected;select not selected;ellipsoid on;ellipsoid 60%;spacefill 0%;wireframe 0.15;color cpk;select _H;ellipsoid off;spacefill 20%;select all renderSticks | Sticks = restrict not selected;select not selected;wireframe 0.3;color cpk renderWireframe | Wireframe = restrict not selected;select not selected;wireframe on;color cpk PDBrenderCartoonsOnly | Cartoon = restrict not selected;select not selected;cartoons on;color structure PDBrenderTraceOnly | Trace = restrict not selected;select not selected;trace on;color structure atomNone | Off = cpk off atom15 | 15% van der Waals = cpk 15% atom20 | 20% van der Waals = cpk 20% atom25 | 25% van der Waals = cpk 25% atom50 | 50% van der Waals = cpk 50% atom75 | 75% van der Waals = cpk 75% atom100 | 100% van der Waals = cpk on bondNone | Off = wireframe off bondWireframe | On = wireframe on bond100 | 0.10 Å = wireframe .1 bond150 | 0.15 Å = wireframe .15 bond200 | 0.20 Å = wireframe .2 bond250 | 0.25 Å = wireframe .25 bond300 | 0.30 Å = wireframe .3 PDBhbondCalc | Calculate = hbonds calculate hbondNone | Off = hbonds off hbondWireframe | On = hbonds on PDBhbondSidechain | Set H-Bonds Side Chain = set hbonds sidechain PDBhbondBackbone | Set H-Bonds Backbone = set hbonds backbone hbond100 | 0.10 Å = hbonds .1 hbond150 | 0.15 Å = hbonds .15 hbond200 | 0.20 Å = hbonds .2 hbond250 | 0.25 Å = hbonds .25 hbond300 | 0.30 Å = hbonds .3 ssbondNone | Off = ssbonds off ssbondWireframe | On = ssbonds on PDBssbondSidechain | Set SS-Bonds Side Chain = set ssbonds sidechain PDBssbondBackbone | Set SS-Bonds Backbone = set ssbonds backbone ssbond100 | 0.10 Å = ssbonds .1 ssbond150 | 0.15 Å = ssbonds .15 ssbond200 | 0.20 Å = ssbonds .2 ssbond250 | 0.25 Å = ssbonds .25 ssbond300 | 0.30 Å = ssbonds .3 structureNone | Off = backbone off;cartoons off;ribbons off;rockets off;strands off;trace off; backbone | Backbone = restrict not selected;select not selected;backbone 0.3 cartoon | Cartoon = restrict not selected;select not selected;set cartoonRockets false;cartoons on cartoonRockets | Cartoon Rockets = restrict not selected;select not selected;set cartoonRockets;cartoons on ribbons | Ribbons = restrict not selected;select not selected;ribbons on rockets | Rockets = restrict not selected;select not selected;rockets on strands | Strands = restrict not selected;select not selected;strands on trace | Trace = restrict not selected;select not selected;trace 0.3 vibrationOff | Off = vibration off vibrationOn | On = vibration on vectorOff | Off = vectors off vectorOn | On = vectors on vector3 | 3 pixels = vectors 3 vector005 | 0.05 Å = vectors 0.05 vector01 | 0.10 Å = vectors 0.1 vectorScale02 | Scale 0.2 = vector scale 0.2 vectorScale05 | Scale 0.5 = vector scale 0.5 vectorScale1 | Scale 1 = vector scale 1 vectorScale2 | Scale 2 = vector scale 2 vectorScale5 | Scale 5 = vector scale 5 stereoNone | None = stereo off stereoRedCyan | Red+Cyan glasses = stereo redcyan 3 stereoRedBlue | Red+Blue glasses = stereo redblue 3 stereoRedGreen | Red+Green glasses = stereo redgreen 3 stereoCrossEyed | Cross-eyed viewing = stereo -5 stereoWallEyed | Wall-eyed viewing = stereo 5 labelNone | None = label off labelSymbol | With Element Symbol = label %e labelName | With Atom Name = label %a labelNumber | With Atom Number = label %i labelCentered | Centered = set labeloffset 0 0 labelUpperRight | Upper Right = set labeloffset 4 4 labelLowerRight | Lower Right = set labeloffset 4 -4 labelUpperLeft | Upper Left = set labeloffset -4 4 labelLowerLeft | Lower Left = set labeloffset -4 -4 zoom50 | 50% = zoom 50 zoom100 | 100% = zoom 100 zoom150 | 150% = zoom 150 zoom200 | 200% = zoom 200 zoom400 | 400% = zoom 400 zoom800 | 800% = zoom 800 zoomIn | Zoom In = move 0 0 0 40 0 0 0 0 1 zoomOut | Zoom Out = move 0 0 0 -40 0 0 0 0 1 spinOn | On = spin on spinOff | Off = spin off s0 | 0 = 0 s5 | 5 = 5 s10 | 10 = 10 s20 | 20 = 20 s30 | 30 = 30 s40 | 40 = 40 s50 | 50 = 50 onceThrough | Play Once = anim mode once# palindrome | Palindrome = anim mode palindrome# loop | Loop = anim mode loop# play | Play = anim play# pause | Pause = anim pause# resume | Resume = anim resume# stop | Stop = anim off# nextframe | Next Frame = frame next# prevframe | Previous Frame = frame prev# playrev | Reverse = anim playrev# rewind | Rewind = anim rewind# restart | Restart = anim on# animfps5 | 5 = anim fps 5# animfps10 | 10 = anim fps 10# animfps20 | 20 = anim fps 20# animfps30 | 30 = anim fps 30# animfps50 | 50 = anim fps 50# measureOff | Double-Click begins and ends all measurements = set pickingstyle MEASURE OFF; set picking OFF measureDistance | Click for distance measurement = set pickingstyle MEASURE; set picking MEASURE DISTANCE measureAngle | Click for angle measurement = set pickingstyle MEASURE; set picking MEASURE ANGLE measureTorsion | Click for torsion (dihedral) measurement = set pickingstyle MEASURE; set picking MEASURE TORSION measureDelete | Delete measurements = measure delete JVM12measureList | List measurements = console on;show measurements distanceNanometers | Distance units nanometers = select *; set measure nanometers distanceAngstroms | Distance units Angstroms = select *; set measure angstroms distancePicometers | Distance units picometers = select *; set measure picometers pickOff | Off = set picking off pickCenter | Center = set picking center pickIdent | Identity = set picking ident pickLabel | Label = set picking label pickAtom | Select atom = set picking atom PDBpickChain | Select chain = set picking chain pickElement | Select element = set picking element PDBpickGroup | Select group = set picking group pickMolecule | Select molecule = set picking molecule SYMMETRYpickSite | Select site = set picking site pickSpin | Spin = set picking spin JVM12showConsole | Console = console showFile | File Contents = console on;show file showFileHeader | File Header = console on;getProperty FileHeader showHistory | History = console on;show history showIsosurface | Isosurface JVXL data = console on;show isosurface showMeasure | Measurements = console on;show measure showMo | Molecular orbital JVXL data = console on;show mo showModel | Model = console on;show model showOrient | Orientation = console on;show orientation showSpacegroup | Space group = conso